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40 lines
1013 B
YAML
40 lines
1013 B
YAML
experiment_id: EXP-YYYYMMDD
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aim: Brief description of experiment aim
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project: Project_Name
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researcher: username
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status: in_progress
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created: YYYY-MM-DD
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sample_location: "-80°C freezer, rack X-X-X-X"
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plate:
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id: PLATE_ID
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layout:
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A1: {gene: "Example1", perturbation: "siRNA", day: 0}
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A2: {gene: "Example2", perturbation: "siRNA", day: 0}
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A3: {gene: "NTC", perturbation: "control", day: 0}
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tasks: # one row per GitHub Issue
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- id: 123 # GitHub Issue number
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title: "Seed cells on plate"
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status: open
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- id: 124
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title: "Transfect siRNA"
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status: open
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sample_preparation:
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method: Sample preparation method
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date: YYYY-MM-DD
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downstream_application:
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assay_type: qPCR
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targets: ["Gene1", "Gene2", "Control"]
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date: YYYY-MM-DD
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data: # added automatically by record_data()
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- path: Data/EXP-YYYYMMDD/example_data.csv
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type: qPCR
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sha256: abcdef1234567890
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added: YYYY-MM-DD
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notes: |
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Additional notes or deviations from protocol. |