docs/aims.md

1. Ybx1 in adipogenesis
   1. Identifying YBX1-CEBPA-cBAF interactions in early, middle, late 3T3-L1 adipogenesis LO
      1. Are we seeing this in all cell types?
   2. YBX1 in adipogenic 3T3 metabolism ?
   3. Loss of SMARCD2, SMARCE1, and YBX1 in differentating 3T3 cells CJ
2. cBAF-CEBPa regulating mir-101 ?
3. Ybx1 in metabolic reprogramming of hepatocytes
   1. PPARg, CEBPa, CEBPb, SMARCD2, SMARCE1, BRG1
   2. Posttranscriptional regulation of lipogenic genes by Ybx1
   3. YBX1 INS1 repression
      1. All cells except pancreatic beta cells?
         1. Absent in pancreatic beta cells?
            1. If so, how?
         2. Targeting YBX1 in certain types of Type 1 diabetes mellitus
   4. YBX1-CEBPa-cBAF in lipid-exposed hepatocytes multiomics
      1. mRNAseq
      2. ATACseq
      3. ChIPseq:
         1. YBX1,
         2. BRG1,
         3. CEBPa,
         4. (and CEBPb).
4. Using artificial intelligence to enhance biological insights
   1. Geo stacking app ER
   2. Transregulator-ATAC pattern finder ?
   3. Increase read mapping speed ?
   4. Lab agent JJ
5. Regulation of Ybx1 cyto-nuclear translocation
6. Metabolic regulation of gene expression
   1. Different nutrient scenarios
   2. Insulin, inhibit beta-oxidation, inhibit glycolysis, ATACseq
7. Environmental affects on hepatocyte cell fate
   1. KLFs
   2. HepaRG
8. Mice
9. Miscellaneous
10. Spheroids/Organoids
11. Robot
12. Directional RNAseq
13. DuoLink
14. FA Uptake
15. Proliferation
16. Lipidomics
17. Oxylipins
18. CelSeq time series
19. In vitro cytonuclear proteomics
    1. Epigenetic memory
       1. Mismatch